Hansen's hand has been forced by injuries sustained by full-back Ben Smith and centre Ryan Crotty in their 30-15 win in the first Test in Auckland last Saturday.
Smith failed a head-injury assessment while Crotty suffered a hamstring strain.
As a result Israel Dagg moves from wing to full-back with Naholo, a try scorer in Highlanders' 23-22 victory over the Lions, taking his spot out wide. Lienert-Brown comes in for Crotty at outside centre.
Ngani Laumape has been rewarded for his performance in Hurricanes' 31-31 draw with the Lions on Tuesday with a place on the bench.
TEAM NAMING | Two changes to the #AllBlacks for second Test of the DHL NZ Lions Series.
— All Blacks (@AllBlacks) June 28, 2017
"Whilst we were happy with the win last weekend, we know that it was just a start, in what is a three-test Series. That means the job is far from done. It's going to require us to take our game to a higher level. It's going to be very demanding, physically and mentally, on both sides," Hansen said.
"We're aware the British and Irish Lions have their backs to the wall and will chuck everything at us to keep themselves alive in the series. They are a quality side who we respect immensely.
"In reality, last week's Test could've gone either way had they taken more of their chances. Our job will be to make sure that we shut down their counter-attack better than we did last weekend and at the same time, win the critical moments across the 80 minutes. As always, it'll start with the battle of the tight five.
"We've worked hard throughout the week in our preparation here in Wellington and are now looking forward to Saturday."
All Blacks team: Israel Dagg, Waisake Naholo, Anton Lienert-Brown, Sonny Bill Williams, Rieko Ioane, Beauden Barrett, Aaron Smith; Joe Moody, Codie Taylor, Owen Franks, Brodie Retallick, Samuel Whitelock, Jerome Kaino, Sam Cane, Kieran Read (captain).
Replacements: Nathan Harris, Wyatt Crockett, Charlie Faumuina, Scott Barrett, Ardie Savea, TJ Perenara, Aaron Cruden, Ngani Laumape.