Land Information New Zealand's Stuart Caie said the work means large cruise ships will soon be able to visit.
He said it will be combined with other recent data to provide electronic maps of Tonga's three main groups.
Mr Caie said the data for Ha'apai will allow updated charts and data needed for modern navigation systems.
"Tongatapu and Vava'u have been surveyed within the last 5 years - 10 years, still fairly recent. So this is really one area where we needed this new data to create these new electronic charts that then can used on the onboard navigation systems of the cruise ships navigating around the area," he said.
Mr Caie said the new data and mapping will be ready by March.