The TRU signed a tripartite agreement with World Rugby and the Tonga Government on Friday , after the global governing body had threatened to pull all financial support.
The new partnership will see a Joint Management Committee take charge of the Union until long-standing governance issues are resolved.
Inoke Afeaki said the TRU had been in a "real mess" for a long time and World Rugby should have intervened earlier.
"I think they're whipping a dead horse," he claimed.