Helio Hermito Zampier Neto, a 31-year-old defender for Chapecoense, was in a stable condition, doctors said, after surgery on a lung, a knee, a wrist and his head.
Five other people survived the crash, which killed 71 people.
Colombian officials say evidence is growing that the plane ran out of fuel.
Miguel Quiroga, the pilot of the British-made Avro RJ85 aircraft, had been warned by an official at Santa Cruz airport, in Bolivia, where the plane took off, that he might not have enough fuel, Bolivian Deber newspaper said.